Inhibitor-Protein Interactions in Japanese Encephalitis Virus: A Computational Approach to Antiviral Discovery
Vikas Jha *
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India.
Siddhartha Pandya
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India and Department of Five Years Integrated Course in Bioanalytical Sciences, GNIRD, G.N. Khalsa College, Matunga-19, Mumbai, Maharashtra, India.
Devyani Pingale
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India and Department of Biotechnology, G. N. Khalsa College, Mumbai, Maharashtra, India.
Sakshi Chidrala
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India and Department of Five Years Integrated Course in Bioanalytical Sciences, GNIRD, G.N. Khalsa College, Matunga-19, Mumbai, Maharashtra, India.
Sejal Shinde
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India and Department of Five Years Integrated Course in Bioanalytical Sciences, GNIRD, G.N. Khalsa College, Matunga-19, Mumbai, Maharashtra, India.
Heenal Panchal
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India.
Kavita Nalawade
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India.
Virag Gada
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India and Department of Biotechnology, G. N. Khalsa College, Mumbai, Maharashtra, India.
Ira Kode
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India.
Siddhi Dhuri
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India.
Hricha Joshi
National Facility for Biopharmaceuticals, G. N. Khalsa College, Mumbai, Maharashtra, India.
*Author to whom correspondence should be addressed.
Abstract
Japanese Encephalitis Virus (JEV) is a mosquito-borne virus that poses a significant health threat, causing severe neurological complications. To explore potential therapeutic interventions, this study utilized computational techniques, including molecular docking and molecular dynamics simulations, to investigate the interaction of Withaferin A, a natural compound derived from Ashwagandha, with specific viral proteins (4HDH and 4K6M).
The results indicate strong binding affinity and favorable interactions between Withaferin A and the target proteins, suggesting its potential to disrupt viral processes. The compound's adherence to Lipinski's Rule of Five and low toxicity profile further support its suitability for drug development. Additionally, Withaferin A exhibits immunomodulatory and cytotoxic properties, which could contribute to its antiviral activity. The study employed tools such as PyRx, Discovery Studio, Chimera, and GROMACS to conduct molecular docking and dynamics simulations, providing valuable insights into the potential mechanism of action of Withaferin A. While additional studies, including clinical validation, are necessary, these results position Withaferin A as a promising candidate for therapeutic intervention against JEV. This research contributes to the ongoing efforts to expand the arsenal of strategies to mitigate the impact of this menacing virus and protect vulnerable populations from its severe neurological effects.
Keywords: Japanese Encephalitis Virus (JEV), computational docking, simulation method, neurological afflictions